Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3239

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11606 and 11607 are separated by 141 nucleotides mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184,726 to 188,428 11606 mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188,570 to 189,872 11607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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187,714 + 11606 mRNA_3238 0.81 +1.3
187,717 - 11606 mRNA_3238 0.81 +1.7
187,720 + 11606 mRNA_3238 0.81 +0.1
188,288 + +0.7
188,346 + +1.0
188,674 + +0.3
188,680 - -0.4
188,738 - 11607 mRNA_3239 0.13 +0.7
188,782 + 11607 mRNA_3239 0.16 -0.5
188,789 + 11607 mRNA_3239 0.17 -0.1
188,792 - 11607 mRNA_3239 0.17 -0.7
188,985 + 11607 mRNA_3239 0.32 +1.2
189,049 - 11607 mRNA_3239 0.37 -0.8
189,207 - 11607 mRNA_3239 0.49 +1.0
189,221 - 11607 mRNA_3239 0.50 -0.1
189,348 + 11607 mRNA_3239 0.60 -0.3
189,385 - 11607 mRNA_3239 0.63 -0.4
189,537 - 11607 mRNA_3239 0.74 -0.2
189,663 - 11607 mRNA_3239 0.84 +2.6
189,800 + -0.0
189,862 - -1.7
189,953 - +0.5
190,061 + +0.8
190,075 + +0.4
190,081 + +1.9
190,236 - +0.7
190,244 + +0.2
190,248 - -1.5
190,265 + +1.3
190,433 - -0.3
190,548 - -0.1
190,596 + +1.5

Or see this region's nucleotide sequence