Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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200,108 + 11612 mRNA_3244 0.62 -1.4
200,206 + 11612 mRNA_3244 0.69 -0.0
200,479 + +0.7
200,500 - +1.9
200,515 - -0.5
200,553 - -0.2
200,597 + +0.4
201,006 - +1.2
201,130 - -2.4
202,039 + 11613 mRNA_3245 0.33 -0.1
202,325 + 11613 mRNA_3245 0.42 -0.4
202,630 + 11613 mRNA_3245 0.53 -0.4
202,767 - 11613 mRNA_3245 0.57 -2.9
203,376 - 11613 mRNA_3245 0.78 -0.7
203,509 + 11613 mRNA_3245 0.82 -0.9
203,657 - 11613 mRNA_3245 0.87 -2.7
203,661 + 11613 mRNA_3245 0.87 -1.4
203,790 - -2.2
203,799 - -4.2
203,946 + -1.9
203,947 + -0.1
204,103 - -1.0
204,225 - +0.2
204,225 - +0.1
204,225 - +0.1
204,234 - -0.5
204,235 - -0.2
204,238 + -0.1
204,250 - -1.2
204,251 + -0.0
204,270 + +0.3
204,278 + -0.2
204,280 + -0.1
204,286 - +0.2
204,290 - -0.4
204,291 - -0.3
204,298 + +0.1
204,314 + +1.4
204,335 - +2.0
204,357 - +0.8
204,383 - +0.2
204,393 - +0.9
204,412 + -1.3
204,437 - -0.9
204,443 - +0.8
204,445 + +1.5
204,447 - +0.9
204,448 + +0.6
204,448 - +0.2
204,454 + +0.2
204,454 + -0.2
204,455 - +2.9
204,463 + +1.0
204,468 - -1.2
204,473 + +0.4
204,479 + +2.0
204,484 - +2.3
204,491 - +0.2
204,511 - -0.5
204,528 - +0.0
204,534 - -0.7
204,547 - +1.3
204,557 + +1.9
204,639 + -0.2
204,647 + -0.7
204,652 - -0.4
204,654 + -1.4
204,664 - -0.7
204,665 + -0.5
204,678 + +0.3
204,695 + +0.6
204,699 + +0.4
204,724 - +2.3
204,727 + -0.5
204,801 - +0.5
204,811 + -0.2
204,826 + -1.0
204,957 - +0.9

Or see this region's nucleotide sequence