Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3292

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11659 and 11660 are separated by 584 nucleotides mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790 11660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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310,115 + 11659 mRNA_3291 0.79 +0.8
310,116 + 11659 mRNA_3291 0.79 +1.1
310,273 - 11659 mRNA_3291 0.90 -0.4
310,292 - -1.7
310,569 - +0.2
310,578 - +1.2
310,594 - +1.0
310,598 - -1.0
310,629 + +0.1
310,629 - -1.0
310,652 - +0.3
310,654 - +0.4
310,655 + +1.1
310,669 - +0.1
310,677 - -1.4
310,706 - -0.7
310,710 - +1.6
310,710 - +0.3
310,748 + +0.4
310,991 - +1.2
311,141 + 11660 mRNA_3292 0.16 +0.5
311,291 - 11660 mRNA_3292 0.36 -0.7
311,294 - 11660 mRNA_3292 0.36 +1.7
311,300 + 11660 mRNA_3292 0.37 -0.4
311,405 - 11660 mRNA_3292 0.50 -0.4
311,468 - 11660 mRNA_3292 0.58 +0.3
311,574 - 11660 mRNA_3292 0.72 +0.7
311,620 + 11660 mRNA_3292 0.78 +0.4
311,632 - 11660 mRNA_3292 0.80 +0.8
311,648 - 11660 mRNA_3292 0.82 -0.1
311,732 - +0.4
311,740 + +0.2
311,755 - -1.2
311,755 + -0.5
311,759 + +0.4
311,764 - +0.8
311,764 - -0.5
311,765 + -0.7
311,772 + -1.8
311,773 - -0.3
311,774 - +0.2
311,775 - +0.3
311,775 - +1.1
311,777 - +0.2
311,777 + +0.2
311,778 + -0.2
311,781 - +0.7
311,781 - -0.4
311,783 + +0.3
311,894 - +1.1
311,956 + +1.3
312,247 + +0.5
312,259 + -0.2
312,304 - +2.2
312,306 - +1.5
312,308 + -0.9
312,308 + +0.3
312,314 - +0.2
312,314 - +0.1
312,316 - -0.3
312,319 - -0.1
312,321 + +0.5
312,341 + +0.9
312,341 + -0.1
312,345 + +0.3
312,351 + -0.2
312,353 - -0.2
312,354 - +0.3
312,355 - +1.0
312,361 + +0.7
312,381 + -0.6
312,393 - +1.0
312,408 - -0.1
312,428 + +0.8
312,456 - -0.3
312,460 - -0.1
312,474 - +0.2
312,482 - +1.9
312,485 - -0.7
312,490 - +0.4
312,493 - +0.6
312,716 + -0.6
312,716 + +1.5
312,753 + +0.5

Or see this region's nucleotide sequence