Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3293

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11661 and 11662 are separated by 13 nucleotides mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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317,285 - +0.5
317,319 + +0.2
317,331 + +0.3
317,418 - +0.8
317,488 + -0.7
317,492 - -1.4
317,788 + -0.6
317,890 + +0.6
317,931 - -1.1
317,946 - +0.8
317,954 - -0.2
318,113 + +0.4
318,128 + +0.6
318,137 - -0.4
318,148 + -0.2
318,234 - -0.6
318,248 - +0.1
318,249 + +1.3
318,255 + +1.4
318,257 - -1.4
318,257 + +1.9
318,271 - +0.0
318,272 + -0.2
318,277 + -0.0
318,417 - 11661 mRNA_3293 0.14 +0.2
318,425 + 11661 mRNA_3293 0.15 -0.1
318,431 + 11661 mRNA_3293 0.15 +0.6
318,435 + 11661 mRNA_3293 0.16 -0.2
318,451 + 11661 mRNA_3293 0.17 -0.3
318,454 + 11661 mRNA_3293 0.17 +0.6
318,574 - 11661 mRNA_3293 0.25 +1.5
318,577 - 11661 mRNA_3293 0.25 -1.1
318,690 - 11661 mRNA_3293 0.33 +0.7
318,773 + 11661 mRNA_3293 0.38 -0.6
318,774 + 11661 mRNA_3293 0.38 +1.1
319,142 - 11661 mRNA_3293 0.63 -1.1
319,157 + 11661 mRNA_3293 0.64 -0.1
319,309 + 11661 mRNA_3293 0.74 +0.4
319,322 - 11661 mRNA_3293 0.75 -0.5
319,333 + 11661 mRNA_3293 0.76 -0.5
319,334 + 11661 mRNA_3293 0.76 +2.0
319,853 + -1.1

Or see this region's nucleotide sequence