Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3314

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11681 and 11682 are separated by 179 nucleotides11682 and 11683 are separated by 920 nucleotides mRNA_3313: 11681 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 369,892 to 372,180 11681 mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372,360 to 374,414 11682 mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375,335 to 379,207 11683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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371,963 + -3.0
372,276 + -0.3
372,282 + +0.2
372,283 + +2.0
372,298 + +0.6
374,188 + 11682 mRNA_3314 0.89 -0.2
374,498 - -2.5
374,511 - -0.2
374,515 - +0.9
374,653 - +2.1
374,659 - +0.9
374,716 - +0.7
374,739 + -0.5
374,782 + +0.6
374,801 + +0.0
374,808 - +0.2
374,825 - +0.3
374,828 - -1.5
374,845 - +1.2
374,851 + -0.0
374,851 + +0.5
374,891 - -0.4
374,983 + +1.1
375,146 + +0.4
375,259 - -0.7
375,259 - +0.5

Or see this region's nucleotide sequence