Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3362

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11729 and 11730 are separated by 389 nucleotides11730 and 11731 are separated by 205 nucleotides mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494,941 to 495,602 11729 mRNA_3362: 11730 - BLAST vacuolar assembly/sorting protein DID2 [Moesziomyces ..., at 495,992 to 499,759 11730 mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499,965 to 500,841 11731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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495,112 - 11729 mRNA_3361 0.26 -0.2
495,158 + 11729 mRNA_3361 0.33 -0.5
495,239 - 11729 mRNA_3361 0.45 -0.0
495,284 + 11729 mRNA_3361 0.52 -0.4
495,868 - -1.4
495,894 - -0.0
495,999 + +0.4
496,002 - +0.5
496,156 + -0.3
496,156 - +0.5
496,185 - +0.2
496,295 - +0.3
496,487 - 11730 mRNA_3362 0.13 +1.9
496,487 - 11730 mRNA_3362 0.13 -0.2
496,605 - 11730 mRNA_3362 0.16 -0.0
496,653 + 11730 mRNA_3362 0.18 +0.4
496,767 + 11730 mRNA_3362 0.21 -0.1
496,820 - 11730 mRNA_3362 0.22 +1.5
496,902 + 11730 mRNA_3362 0.24 +1.1
497,014 + 11730 mRNA_3362 0.27 +0.1
497,440 + 11730 mRNA_3362 0.38 -0.5
497,452 - 11730 mRNA_3362 0.39 -0.3
497,549 - 11730 mRNA_3362 0.41 +0.5
497,621 + 11730 mRNA_3362 0.43 -0.1
497,682 - 11730 mRNA_3362 0.45 +1.0
497,937 + 11730 mRNA_3362 0.52 +0.4
497,964 + 11730 mRNA_3362 0.52 +0.9
498,092 + 11730 mRNA_3362 0.56 +1.2
498,256 + 11730 mRNA_3362 0.60 +0.6
498,355 - 11730 mRNA_3362 0.63 +2.4
498,545 + 11730 mRNA_3362 0.68 -0.0
498,561 + 11730 mRNA_3362 0.68 -1.3
498,673 + 11730 mRNA_3362 0.71 -1.5
498,847 - 11730 mRNA_3362 0.76 -0.3
498,915 + 11730 mRNA_3362 0.78 -0.5
498,943 + 11730 mRNA_3362 0.78 -0.0
499,063 + 11730 mRNA_3362 0.82 -1.9
499,066 - 11730 mRNA_3362 0.82 +1.1
499,066 - 11730 mRNA_3362 0.82 -0.2
499,125 - 11730 mRNA_3362 0.83 +0.7
499,249 + 11730 mRNA_3362 0.86 -0.5
499,266 + 11730 mRNA_3362 0.87 +1.2
499,435 + +2.1
499,459 - -0.7
499,554 - +1.4
499,557 + -0.3
499,700 - +1.1
499,701 - -0.1
499,708 + +0.7
499,719 - +0.9
499,860 - +2.1
499,872 + +0.7
499,912 - -1.0
499,954 - +0.1
500,007 - -0.1
500,014 - +2.5

Or see this region's nucleotide sequence