Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3370

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11737 and 11738 are separated by 650 nucleotides11738 and 11739 are separated by 911 nucleotides mRNA_3369: 11737 - KOG2659 LisH motif-containing protein, at 511,919 to 513,281 11737 mRNA_3370: 11738 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 513,932 to 515,418 11738 mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516,330 to 521,387 11739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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513,086 - 11737 mRNA_3369 0.86 -0.0
513,095 + 11737 mRNA_3369 0.86 -0.4
513,120 + 11737 mRNA_3369 0.88 +0.4
513,270 + +0.2
513,338 - +0.0
513,349 + -0.5
513,375 - +0.0
513,379 + +0.2
513,384 - -0.1
513,386 + -1.4
513,402 - +1.8
513,529 + +0.9
513,541 + -0.5
513,640 - +0.2
513,691 + -0.9
513,838 - +1.1
513,848 + -1.1
513,934 - +0.6
513,960 - -0.6
514,002 - +0.9
514,012 + -0.1
514,104 - 11738 mRNA_3370 0.12 +0.9
514,110 + 11738 mRNA_3370 0.12 +1.5
514,112 - 11738 mRNA_3370 0.12 +1.3
514,116 + 11738 mRNA_3370 0.12 +1.9
514,118 - 11738 mRNA_3370 0.13 +1.0
514,256 + 11738 mRNA_3370 0.22 +0.4
514,277 - 11738 mRNA_3370 0.23 -0.3
514,363 + 11738 mRNA_3370 0.29 +0.7
514,412 + 11738 mRNA_3370 0.32 -0.1
514,423 - 11738 mRNA_3370 0.33 +0.5
514,465 + 11738 mRNA_3370 0.36 +0.1
514,576 + 11738 mRNA_3370 0.43 +2.4
514,586 + 11738 mRNA_3370 0.44 +1.2
514,703 - 11738 mRNA_3370 0.52 +0.6
514,865 + 11738 mRNA_3370 0.63 +1.3
514,872 + 11738 mRNA_3370 0.63 -0.6
515,010 - 11738 mRNA_3370 0.72 +0.3
515,136 + 11738 mRNA_3370 0.81 -2.5
515,183 + 11738 mRNA_3370 0.84 +0.9
515,287 - +0.4
515,319 - +0.7
515,329 - -0.4
515,473 + +1.4
515,483 + -1.6
515,485 + +2.5
515,505 + +1.1
515,526 + -0.8
515,583 - -0.1
515,593 + +2.5
515,611 - +0.5
515,638 - +1.4
515,639 - +2.0
515,639 - +1.9
515,642 + +1.0
515,642 - +0.9
515,645 + +0.3
515,647 + +0.1
515,648 + +4.1
515,648 + +0.7
515,648 + -0.8
515,652 - +1.2
515,656 - +0.7
515,658 + -0.7
515,660 + +1.7
515,667 + -0.3
515,669 + +0.4
515,674 - +0.1
515,677 - +0.4
515,677 + +0.0
515,683 + +0.5
515,690 + +0.7
515,710 + +1.9
515,729 - +1.0
515,772 - -0.9
515,875 + -0.9
515,881 - -1.1
515,881 - -0.1
515,881 + -1.0
515,881 - +1.8
515,881 - +1.5
515,882 + +0.8
515,882 - +1.1
515,896 - +0.7
515,901 + -0.9
515,902 + +0.5
515,902 + +0.8
515,905 + +2.0
515,908 - -0.0
515,914 - +2.1
515,914 + -0.1
515,914 - +0.7
515,919 + +1.3
515,920 - +2.7
515,926 + +0.7
515,935 - +0.2
515,940 + +1.1
515,941 - +1.1
515,947 - +1.3
516,164 - +0.7
516,356 - +1.3
516,369 - +0.8

Or see this region's nucleotide sequence