Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3386

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11753 and 11754 are separated by 348 nucleotides11754 and 11755 are separated by 105 nucleotides mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554,455 to 555,770 11753 mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556,119 to 557,419 11754 mRNA_3387: 11755 - K01771 plc 1-phosphatidylinositol phosphodiesterase, at 557,525 to 558,870 11755

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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555,302 - 11753 mRNA_3385 0.64 +1.1
555,385 + 11753 mRNA_3385 0.71 +0.7
555,632 + 11753 mRNA_3385 0.89 -0.1
555,812 + -0.3
555,813 - -0.5
555,958 - -0.3
555,965 + +1.5
555,967 + +0.6
555,975 + -0.1
555,976 - -0.1
555,989 + +0.1
556,011 - -0.7
557,477 - -0.6
557,667 + 11755 mRNA_3387 0.11 +0.2
557,867 - 11755 mRNA_3387 0.25 +2.1
557,867 - 11755 mRNA_3387 0.25 -0.0
557,868 + 11755 mRNA_3387 0.25 -1.2
557,927 - 11755 mRNA_3387 0.30 -1.6
557,933 - 11755 mRNA_3387 0.30 +0.2
557,938 + 11755 mRNA_3387 0.31 +1.0
557,941 - 11755 mRNA_3387 0.31 +0.7
558,056 - 11755 mRNA_3387 0.39 +1.4
558,059 - 11755 mRNA_3387 0.40 +0.2
558,065 - 11755 mRNA_3387 0.40 +0.2
558,169 - 11755 mRNA_3387 0.48 +0.9
558,262 - 11755 mRNA_3387 0.55 +0.2
558,329 - 11755 mRNA_3387 0.60 +1.1

Or see this region's nucleotide sequence