Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3398

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11765 and 11766 are separated by 396 nucleotides11766 and 11767 are separated by 459 nucleotides mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579,279 to 580,457 11765 mRNA_3398: 11766 - Hypothetical Protein, at 580,854 to 581,831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582,291 to 585,718 11767

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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579,878 - 11765 mRNA_3397 0.51 +1.0
579,923 - 11765 mRNA_3397 0.55 +0.4
579,923 + 11765 mRNA_3397 0.55 +0.7
579,924 - 11765 mRNA_3397 0.55 +0.8
579,980 + 11765 mRNA_3397 0.59 +0.5
580,068 + 11765 mRNA_3397 0.67 +1.4
580,071 - 11765 mRNA_3397 0.67 +0.6
580,212 - 11765 mRNA_3397 0.79 +0.9
580,227 - 11765 mRNA_3397 0.80 +1.2
580,388 - +0.8
580,725 + -0.6
581,125 + 11766 mRNA_3398 0.28 -1.0
581,187 - 11766 mRNA_3398 0.34 +0.8
581,252 + 11766 mRNA_3398 0.41 -1.3
581,276 - 11766 mRNA_3398 0.43 +0.6
581,276 - 11766 mRNA_3398 0.43 -1.0
581,289 + 11766 mRNA_3398 0.44 -2.0
581,312 + 11766 mRNA_3398 0.47 -0.3
581,400 + 11766 mRNA_3398 0.56 -1.1
581,407 + 11766 mRNA_3398 0.57 -0.4
581,422 + 11766 mRNA_3398 0.58 -1.3
581,435 - 11766 mRNA_3398 0.59 +1.0
581,524 + 11766 mRNA_3398 0.69 -0.5
581,554 - 11766 mRNA_3398 0.72 -0.7
581,570 + 11766 mRNA_3398 0.73 -1.6
581,721 + 11766 mRNA_3398 0.89 -0.5
581,729 + 11766 mRNA_3398 0.89 -1.9
581,730 + 11766 mRNA_3398 0.90 -0.1
581,851 - -0.6
581,862 + -0.6
581,882 - +0.5
581,889 - -0.5
581,900 + -1.3
581,912 - -1.0
581,956 + -0.2
581,978 + +0.1
581,983 + +1.4
581,985 - +0.7
581,989 - -0.2
581,993 + +1.7
581,994 - -1.1
582,001 + +0.9
582,007 - -1.1
582,014 + +0.7
582,023 - -0.1
582,026 + +0.1
582,032 + -0.0
582,037 - +0.7
582,039 - +2.2
582,113 - +0.1
582,310 + +0.2
582,311 + +0.7
582,312 + +0.2
582,580 + -0.3
582,721 + 11767 mRNA_3399 0.13 +0.1
582,753 - 11767 mRNA_3399 0.13 +0.5

Or see this region's nucleotide sequence