Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3454

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11821 and 11822 are separated by 96 nucleotides11822 and 11823 are separated by 93 nucleotides mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138,350 to 139,548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139,645 to 140,934 11822 mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141,028 to 142,309 11823

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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138,763 - 11821 mRNA_3453 0.34 -2.2
139,314 + 11821 mRNA_3453 0.80 +0.1
139,360 + 11821 mRNA_3453 0.84 +2.7
139,470 - +0.6
139,508 + -0.3
139,743 + +0.5
139,775 - 11822 mRNA_3454 0.10 +1.1
140,295 + 11822 mRNA_3454 0.50 -0.9
140,352 + 11822 mRNA_3454 0.55 +1.1
140,366 - 11822 mRNA_3454 0.56 -0.1
140,397 + 11822 mRNA_3454 0.58 +1.0
140,458 + 11822 mRNA_3454 0.63 +0.1
140,461 - 11822 mRNA_3454 0.63 -0.0
140,461 - 11822 mRNA_3454 0.63 +0.2
140,531 + 11822 mRNA_3454 0.69 +1.3
140,629 - 11822 mRNA_3454 0.76 -0.1
140,645 - 11822 mRNA_3454 0.78 +0.5
140,811 - +0.1
140,996 - +2.6
141,158 - 11823 mRNA_3455 0.10 -0.2
141,232 + 11823 mRNA_3455 0.16 +0.4
141,251 + 11823 mRNA_3455 0.17 -0.5
141,822 + 11823 mRNA_3455 0.62 +0.2

Or see this region's nucleotide sequence