Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3485

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11852 and 11853 are separated by 506 nucleotides11853 and 11854 are separated by 331 nucleotides mRNA_3484: 11852 - Hypothetical Protein, at 215,787 to 216,323 11852 mRNA_3485: 11853 - HMMPfam-Neugrin-PF06413, at 216,830 to 218,374 11853 mRNA_3486: 11854 - K04563 CDC28, CDC2 cyclin-dependent kinase, at 218,706 to 220,470 11854

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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215,889 - 11852 mRNA_3484 0.19 -0.3
215,990 + 11852 mRNA_3484 0.38 +3.1
216,126 - 11852 mRNA_3484 0.63 -0.7
216,259 - 11852 mRNA_3484 0.88 -2.5
216,458 + +0.6
216,521 + -0.8
216,858 - -1.4
218,472 + -0.4
218,479 + -0.4
218,481 + +1.9
218,485 + +1.0
218,590 - +0.2
218,624 + +1.7

Or see this region's nucleotide sequence