Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3518

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11885 and 11886 are separated by 64 nucleotides11886 and 11887 are separated by 588 nucleotides mRNA_3517: 11885 - K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1, at 290,580 to 295,754 11885 mRNA_3518: 11886 - K12275 SEC62 translocation protein SEC62, at 295,819 to 296,849 11886 mRNA_3519: 11887 - KOG4686 Predicted sugar transporter, at 297,438 to 299,524 11887

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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296,896 + +0.1
296,898 - -0.9
296,903 + +0.1
296,912 + +2.3
297,076 - +0.2
297,103 - -0.7
297,104 + -1.6
297,138 + -1.2
297,156 - +0.2
297,167 - +0.6
297,181 + +1.5
297,193 - +2.1
297,211 + +0.2
297,211 + +0.3
297,214 - -1.4
297,230 - +0.6
297,281 - +0.5
297,288 - -1.1
297,305 + +1.5
297,312 + +0.6
297,356 - -0.5
297,417 - +1.0
297,477 + +0.7
297,510 - +1.3
297,811 + 11887 mRNA_3519 0.18 +1.3

Or see this region's nucleotide sequence