Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3523

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11890 and 11891 are separated by 363 nucleotides11891 and 11892 are separated by 432 nucleotides mRNA_3522: 11890 - K03008 RPB11, POLR2J DNA-directed RNA polymerase II subunit RPB11, at 303,792 to 304,536 11890 mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304,900 to 306,087 11891 mRNA_3524: 11892 - Hypothetical Protein, at 306,520 to 307,367 11892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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304,550 + +0.5
304,553 + +1.7
304,669 + +0.1
304,687 - +0.2
304,702 + +0.5
304,847 + +1.4
304,993 + +0.0
305,003 + +0.0
305,010 + +0.8
305,408 - 11891 mRNA_3523 0.43 +0.8
305,415 - 11891 mRNA_3523 0.43 +0.2
305,701 - 11891 mRNA_3523 0.67 +0.4
305,831 - 11891 mRNA_3523 0.78 +0.1
305,995 - +0.6
306,002 + +0.7
306,456 + +0.5
306,584 + +0.8
306,829 + 11892 mRNA_3524 0.36 -0.9
306,840 + 11892 mRNA_3524 0.38 +0.7
306,998 - 11892 mRNA_3524 0.56 +1.4
307,043 + 11892 mRNA_3524 0.62 +0.8
307,053 + 11892 mRNA_3524 0.63 +0.2
307,084 + 11892 mRNA_3524 0.67 +0.6

Or see this region's nucleotide sequence