Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3554

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11921 and 11922 are separated by 134 nucleotides11922 and 11923 are separated by 570 nucleotides mRNA_3553: 11921 - Hypothetical Protein, at 34,390 to 35,973 11921 mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36,108 to 36,965 11922 mRNA_3555: 11923 - Hypothetical Protein, at 37,536 to 38,312 11923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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35,203 - 11921 mRNA_3553 0.51 +0.2
35,655 + 11921 mRNA_3553 0.80 +1.0
35,754 - 11921 mRNA_3553 0.86 +1.7
35,766 + 11921 mRNA_3553 0.87 +0.1
36,292 - 11922 mRNA_3554 0.21 +0.0
36,474 + 11922 mRNA_3554 0.43 -1.1
36,656 + 11922 mRNA_3554 0.64 -0.3
36,808 + 11922 mRNA_3554 0.82 -0.7
36,824 + 11922 mRNA_3554 0.83 +3.2
36,913 + +0.7
37,189 - -1.1
37,505 + -0.2
37,550 - +0.1
37,558 - +1.1
37,568 - -0.6
37,569 + -1.3
37,571 + -0.5
37,609 + -0.3
37,610 - +1.1
37,630 - 11923 mRNA_3555 0.12 +0.3
37,630 + 11923 mRNA_3555 0.12 -0.0
37,632 + 11923 mRNA_3555 0.12 +0.4
37,636 + 11923 mRNA_3555 0.13 -0.5
37,646 + 11923 mRNA_3555 0.14 +1.4
37,650 - 11923 mRNA_3555 0.15 +0.1
37,684 - 11923 mRNA_3555 0.19 +0.7
37,746 + 11923 mRNA_3555 0.27 -0.0
37,753 + 11923 mRNA_3555 0.28 +1.2
37,760 + 11923 mRNA_3555 0.29 +0.6
37,763 + 11923 mRNA_3555 0.29 +0.6
37,812 - 11923 mRNA_3555 0.36 +3.2
37,822 - 11923 mRNA_3555 0.37 -0.7
37,833 + 11923 mRNA_3555 0.38 +0.0
37,833 - 11923 mRNA_3555 0.38 -0.3
37,835 + 11923 mRNA_3555 0.38 +0.3
37,844 - 11923 mRNA_3555 0.40 +1.8
37,848 - 11923 mRNA_3555 0.40 +0.9
37,861 + 11923 mRNA_3555 0.42 +0.7
37,865 - 11923 mRNA_3555 0.42 -0.1
37,867 + 11923 mRNA_3555 0.43 +1.3
37,870 + 11923 mRNA_3555 0.43 +1.5
37,871 + 11923 mRNA_3555 0.43 -0.6
37,877 + 11923 mRNA_3555 0.44 +1.0
37,885 - 11923 mRNA_3555 0.45 +1.4
37,920 + 11923 mRNA_3555 0.49 +1.1
37,920 + 11923 mRNA_3555 0.49 -0.6
37,924 + 11923 mRNA_3555 0.50 +0.8
37,931 + 11923 mRNA_3555 0.51 -0.4

Or see this region's nucleotide sequence