Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3569

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11936 and 11937 are separated by 238 nucleotides11937 and 11938 are separated by 89 nucleotides mRNA_3568: 11936 - KOG4055 Uncharacterized conserved protein, at 70,969 to 72,030 11936 mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72,269 to 75,186 11937 mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75,276 to 76,903 11938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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72,002 + +1.1
72,007 - +0.0
72,231 - +0.3
72,267 - +0.9
72,271 + +0.6
72,390 + +0.9
72,425 + +1.3
72,716 - 11937 mRNA_3569 0.15 +0.2
72,730 - 11937 mRNA_3569 0.16 +0.8
72,821 - 11937 mRNA_3569 0.19 +0.8
72,857 - 11937 mRNA_3569 0.20 +1.0
72,862 + 11937 mRNA_3569 0.20 +2.7
72,928 - 11937 mRNA_3569 0.23 -1.2
73,022 + 11937 mRNA_3569 0.26 +1.7
73,170 - 11937 mRNA_3569 0.31 +0.2
73,736 + 11937 mRNA_3569 0.50 +2.1
73,736 + 11937 mRNA_3569 0.50 -0.3
73,879 + 11937 mRNA_3569 0.55 +0.9
74,047 - 11937 mRNA_3569 0.61 -1.3
74,631 - 11937 mRNA_3569 0.81 +1.5
74,771 - 11937 mRNA_3569 0.86 -0.1
74,786 - 11937 mRNA_3569 0.86 -1.6
74,794 + 11937 mRNA_3569 0.87 -0.4
74,802 - 11937 mRNA_3569 0.87 +0.3
74,812 - 11937 mRNA_3569 0.87 +0.5
74,840 - 11937 mRNA_3569 0.88 +1.4
74,932 - +0.5
74,934 - -0.3
74,936 - +1.6
74,939 - +0.9
74,963 + -1.4
74,965 + -0.1
75,062 + +0.3
75,087 - +0.5
75,087 - +0.0
75,105 + -0.0
75,119 + +0.4
75,119 + -0.7
75,122 - -0.9
75,123 - -0.4
75,271 + +1.2
75,548 - 11938 mRNA_3570 0.17 -0.5
75,558 + 11938 mRNA_3570 0.17 +1.0
75,807 + 11938 mRNA_3570 0.33 +1.6
75,994 + 11938 mRNA_3570 0.44 -1.4
76,099 - 11938 mRNA_3570 0.51 +0.1
76,125 + 11938 mRNA_3570 0.52 +0.7

Or see this region's nucleotide sequence