Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3573

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11940 and 11941 overlap by 4 nucleotides11941 and 11942 are separated by 558 nucleotides mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79,105 to 81,061 11940 mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81,058 to 83,632 11941 mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84,191 to 85,564 11942

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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80,640 - 11940 mRNA_3572 0.78 -1.0
80,686 + 11940 mRNA_3572 0.81 +1.4
80,991 - -0.8
81,273 + +0.4
81,381 + 11941 mRNA_3573 0.13 +0.9
81,411 + 11941 mRNA_3573 0.14 +1.0
81,630 - 11941 mRNA_3573 0.22 +0.6
81,637 + 11941 mRNA_3573 0.22 -1.6
81,702 - 11941 mRNA_3573 0.25 -0.0
81,937 + 11941 mRNA_3573 0.34 +0.6
82,559 + 11941 mRNA_3573 0.58 +1.2
83,155 + 11941 mRNA_3573 0.81 -0.2
83,693 - +0.5
83,736 + -0.7
83,855 - +0.4
83,855 - +1.3
83,872 + -0.9
84,027 + +0.0
84,149 - +1.1
84,311 - -0.8
84,340 - 11942 mRNA_3574 0.11 -0.3
84,591 + 11942 mRNA_3574 0.29 -0.1
84,603 + 11942 mRNA_3574 0.30 +1.8

Or see this region's nucleotide sequence