Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3585

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11952 and 11953 are separated by 731 nucleotides mRNA_3584: 11952 - K00122 FDH formate dehydrogenase, at 104,607 to 106,241 11952 mRNA_3585: 11953 - KOG1339 Aspartyl protease, at 106,973 to 108,703 11953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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106,048 - 11952 mRNA_3584 0.88 +0.5
106,160 - +0.3
106,325 - +1.6
106,343 - +1.6
106,344 - -0.9
106,348 + -0.0
106,352 - +0.0
106,359 + +1.9
106,362 + -0.9
106,362 + -0.8
106,373 - +2.5
106,379 + +0.4
106,380 + +0.8
106,388 + +0.1
106,397 + +2.4
106,400 - +0.6
106,412 + +1.5
106,412 - -0.4
106,416 + +0.1
106,417 + +2.3
106,441 - +0.4
106,445 + -0.6
106,459 - +0.6
106,489 + +0.9
106,490 - +0.2
106,500 - +1.2
106,505 - -1.3
106,507 + +2.8
106,511 - -0.3
106,519 + -0.1
106,541 - -0.0
106,542 + +1.3
106,555 + +0.2
106,654 + +0.9
106,799 - -0.4
106,808 - -0.4
106,822 + +0.2
107,061 - -0.6
107,107 + +1.3
107,365 - 11953 mRNA_3585 0.23 +1.3
108,019 + 11953 mRNA_3585 0.60 +0.3
108,816 - -0.8
108,824 + +1.0
108,860 - +0.0
109,033 + +1.1
109,088 + +0.6
109,101 - -0.2
109,112 - -0.3
109,132 - +1.4
109,191 + +0.8
109,232 + +0.4
109,253 - +0.6
109,262 - +0.3
109,360 + -0.3
109,398 - +0.8
109,398 + +1.1
109,403 + +0.1
109,410 - +1.5
109,414 + +1.9
109,432 - +1.0
109,468 - +0.2
109,470 - +0.4
109,477 + +0.8
109,547 + -0.1
109,567 + +0.5
109,574 - -0.3
109,577 + +0.0
109,585 - -0.4
109,586 - +0.4
109,623 - +0.7
109,646 + +0.9
109,666 - -0.1

Or see this region's nucleotide sequence