Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3603

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11970 and 11971 are separated by 208 nucleotides11971 and 11972 are separated by 191 nucleotides mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149,343 to 150,921 11970 mRNA_3603: 11971 - K13628 iscA, ISCA1 iron-sulfur cluster assembly protein, at 151,130 to 151,909 11971 mRNA_3604: 11972 - K10950 ERO1L ERO1-like protein alpha, at 152,101 to 154,380 11972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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150,227 + 11970 mRNA_3602 0.56 +0.1
150,472 + 11970 mRNA_3602 0.72 -0.9
150,621 - 11970 mRNA_3602 0.81 -0.1
150,738 + 11970 mRNA_3602 0.88 -0.9
150,759 + 11970 mRNA_3602 0.90 -0.4
150,900 - +0.8
150,928 - +0.8
150,937 - -0.6
150,938 + +0.3
150,942 + +0.6
151,050 + -0.5
151,052 + -0.2
151,058 + +0.8
151,083 - -1.6
151,094 + -0.3
151,110 + +1.4
151,111 - -1.0
151,118 + +1.7
151,118 - +1.0
151,983 - +0.5

Or see this region's nucleotide sequence