Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3605

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11972 and 11973 are separated by 411 nucleotides11973 and 11974 are separated by 138 nucleotides mRNA_3604: 11972 - K10950 ERO1L ERO1-like protein alpha, at 152,101 to 154,380 11972 mRNA_3605: 11973 - K01872 AARS, alaS alanyl-tRNA synthetase, at 154,792 to 158,003 11973 mRNA_3606: 11974 - HMMPfam-Tho complex subunit 7-PF05615, at 158,142 to 159,312 11974

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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154,446 - +1.9
154,448 + +1.1
154,451 + +1.3
154,464 - -0.0
154,474 - -0.2
154,475 + +3.0
154,479 + +2.1
154,494 + +1.1
154,503 + +1.7
154,583 - +0.5
154,608 - -0.6
154,615 + +0.2
154,658 + +0.1
158,041 - +1.4
158,141 + -1.8
158,176 - +0.8
158,573 - 11974 mRNA_3606 0.37 +0.1
158,579 - 11974 mRNA_3606 0.37 -0.3
158,919 - 11974 mRNA_3606 0.66 +1.4

Or see this region's nucleotide sequence