Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3608

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11975 and 11976 are separated by 665 nucleotides11976 and 11977 are separated by 375 nucleotides mRNA_3607: 11975 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 159,428 to 160,353 11975 mRNA_3608: 11976 - Hypothetical Protein, at 161,019 to 162,088 11976 mRNA_3609: 11977 - K00235 SDHB, SDH2 succinate dehydrogenase (ubiquinone) iron-sulfur subunit, at 162,464 to 163,802 11977

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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160,202 + 11975 mRNA_3607 0.84 -0.3
160,222 + 11975 mRNA_3607 0.86 +0.0
160,470 - -0.7
160,508 + +1.0
160,515 - +0.5
160,686 + -0.2
160,813 - +0.3
161,184 - 11976 mRNA_3608 0.15 +0.1
161,232 + 11976 mRNA_3608 0.20 -0.1
161,473 + 11976 mRNA_3608 0.42 +0.2
161,523 - 11976 mRNA_3608 0.47 +0.3
161,538 - 11976 mRNA_3608 0.49 -1.2
161,709 + 11976 mRNA_3608 0.64 +1.0
161,826 + 11976 mRNA_3608 0.75 +1.6
162,091 - +1.6
162,421 - +0.3

Or see this region's nucleotide sequence