Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3647

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12014 and 12015 are separated by 455 nucleotides12015 and 12016 are separated by 598 nucleotides mRNA_3646: 12014 - Hypothetical Protein, at 249,601 to 250,328 12014 mRNA_3647: 12015 - Hypothetical Protein, at 250,784 to 251,947 12015 mRNA_3648: 12016 - K15448 TRM112, TRMT112 multifunctional methyltransferase subunit TRM112, at 252,546 to 253,342 12016

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
249,786 - 12014 mRNA_3646 0.25 -0.4
249,790 - 12014 mRNA_3646 0.26 -0.9
249,795 - 12014 mRNA_3646 0.27 -0.5
249,797 - 12014 mRNA_3646 0.27 -0.7
249,804 + 12014 mRNA_3646 0.28 +0.8
249,806 + 12014 mRNA_3646 0.28 -1.0
249,816 - 12014 mRNA_3646 0.30 +0.3
249,822 - 12014 mRNA_3646 0.30 +0.3
249,927 + 12014 mRNA_3646 0.45 -0.3
249,941 - 12014 mRNA_3646 0.47 +0.5
249,945 + 12014 mRNA_3646 0.47 +0.3
249,946 + 12014 mRNA_3646 0.47 -0.1
249,947 - 12014 mRNA_3646 0.48 +0.8
249,953 - 12014 mRNA_3646 0.48 +0.2
249,954 - 12014 mRNA_3646 0.48 +0.1
249,955 + 12014 mRNA_3646 0.49 -0.6
249,963 + 12014 mRNA_3646 0.50 -2.0
249,966 - 12014 mRNA_3646 0.50 +0.7
249,976 - 12014 mRNA_3646 0.52 -0.2
249,982 + 12014 mRNA_3646 0.52 -0.3
250,079 - 12014 mRNA_3646 0.66 +1.4
250,238 - 12014 mRNA_3646 0.88 +0.6
250,246 - 12014 mRNA_3646 0.89 -0.5
250,246 - 12014 mRNA_3646 0.89 +0.3
250,249 + 12014 mRNA_3646 0.89 +0.2
250,250 - 12014 mRNA_3646 0.89 +0.9
250,254 + 12014 mRNA_3646 0.90 +0.1
250,254 - 12014 mRNA_3646 0.90 +0.3
250,254 + 12014 mRNA_3646 0.90 -0.2
250,255 + 12014 mRNA_3646 0.90 +0.3
250,259 - -0.4
250,262 - -0.6
250,263 + +0.3
250,263 + -0.2
250,269 + +0.6
250,298 - -0.7
250,322 + +0.3
250,330 - -0.1
250,346 - -0.1
250,358 + +2.3
250,455 - +1.0
250,464 - +2.6
250,468 + -0.9
250,738 - -0.2
250,758 + +1.4
250,765 + -0.1
251,206 + 12015 mRNA_3647 0.36 +0.8
251,312 - 12015 mRNA_3647 0.45 +0.2
251,344 + 12015 mRNA_3647 0.48 -0.1
251,621 + 12015 mRNA_3647 0.72 +0.7
252,048 - +0.2
252,197 - -0.5
252,481 - -1.3
252,496 - -0.0
252,505 - +1.4

Or see this region's nucleotide sequence