Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3676

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12044 and 12045 are separated by 482 nucleotides mRNA_3676: 12044 - K11833 USP2_21 ubiquitin carboxyl-terminal hydrolase 2/21, at 319,421 to 320,803 12044 mRNA_3677: 12045 - KOG0266 WD40 repeat-containing protein, at 321,286 to 323,880 12045

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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318,871 + +1.4
319,855 - 12044 mRNA_3676 0.31 -0.4
321,015 + +0.6
321,121 + -1.0
321,171 + -0.6
321,293 + -0.1
321,311 - +2.2
321,448 - -2.2
321,527 + -1.1
321,712 - 12045 mRNA_3677 0.16 +0.7

Or see this region's nucleotide sequence