Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3689

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12056 and 12057 are separated by 253 nucleotides12057 and 12058 are separated by 498 nucleotides mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352,283 to 353,789 12056 mRNA_3689: 12057 - Hypothetical Protein, at 354,043 to 355,679 12057 mRNA_3690: 12058 - BLAST Ser/Thr protein kinase [Mucor ambiguus], at 356,178 to 360,570 12058

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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353,504 + 12056 mRNA_3688 0.81 +1.5
353,799 + +0.1
353,845 - +0.2
353,865 + +0.2
353,876 - +1.9
353,877 - -1.2
353,877 - -0.1
353,883 - -0.1
353,884 - -1.2
353,889 - +1.1
353,890 - +1.5
353,892 + +0.3
353,892 + +0.3
353,896 + +0.9
353,897 - -1.2
353,903 - -0.8
354,062 + +1.6
354,197 + +1.0
354,452 + 12057 mRNA_3689 0.25 -0.2
355,647 + +1.2
355,823 + +0.4
356,086 + -0.7
356,111 - -0.6
356,547 + -0.4

Or see this region's nucleotide sequence