Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3843

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12209 and 12210 are separated by 260 nucleotides12210 and 12211 are separated by 156 nucleotides12211 and 12212 are separated by 115 nucleotides mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612 12212

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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718,527 - -0.8
718,789 - -1.5
718,822 + +0.1
718,847 + +1.9
718,929 + 12210 mRNA_3842 0.15 -0.9
718,962 - 12210 mRNA_3842 0.22 +0.4
718,970 + 12210 mRNA_3842 0.23 -0.1
718,998 - 12210 mRNA_3842 0.29 +0.6
719,110 - 12210 mRNA_3842 0.51 +1.6
719,119 + 12210 mRNA_3842 0.53 +0.4
719,136 + 12210 mRNA_3842 0.56 -0.1
719,272 - 12210 mRNA_3842 0.83 +0.6
719,318 + +0.1
719,396 - +1.4
719,569 - +1.2
719,590 - +1.3
720,019 - 12211 mRNA_3843 0.14 +1.2
720,536 + 12211 mRNA_3843 0.28 -0.1
720,570 - 12211 mRNA_3843 0.29 -0.2
720,574 - 12211 mRNA_3843 0.29 -0.2
720,583 - 12211 mRNA_3843 0.29 +0.9
720,597 - 12211 mRNA_3843 0.29 -1.5
720,697 - 12211 mRNA_3843 0.32 +0.5
720,713 + 12211 mRNA_3843 0.32 -0.8
720,740 + 12211 mRNA_3843 0.33 +0.4
720,825 + 12211 mRNA_3843 0.35 +0.5
720,876 - 12211 mRNA_3843 0.37 +1.3
721,019 - 12211 mRNA_3843 0.41 +0.4
721,160 - 12211 mRNA_3843 0.44 +2.1
721,305 - 12211 mRNA_3843 0.48 +0.2
721,470 - 12211 mRNA_3843 0.53 +2.7
721,496 + 12211 mRNA_3843 0.54 -0.9
721,755 + 12211 mRNA_3843 0.61 -2.1
721,771 + 12211 mRNA_3843 0.61 -1.0
721,897 + 12211 mRNA_3843 0.64 +0.4
721,927 - 12211 mRNA_3843 0.65 -0.1
722,179 - 12211 mRNA_3843 0.72 -0.5
722,208 + 12211 mRNA_3843 0.73 +0.6
722,347 + 12211 mRNA_3843 0.77 -0.2
722,480 - 12211 mRNA_3843 0.80 +0.8
722,503 + 12211 mRNA_3843 0.81 +0.4
722,505 + 12211 mRNA_3843 0.81 +0.4
722,732 - 12211 mRNA_3843 0.87 +1.6
722,776 + 12211 mRNA_3843 0.88 +0.9
722,943 + +1.0
723,055 - +0.6
723,639 - 12212 mRNA_3844 0.14 +1.0
723,696 - 12212 mRNA_3844 0.16 -0.8
724,082 - 12212 mRNA_3844 0.33 -0.3
724,108 + 12212 mRNA_3844 0.34 +0.4
724,141 + 12212 mRNA_3844 0.36 -0.1

Or see this region's nucleotide sequence