Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3867

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12235 and 12236 are separated by 254 nucleotides mRNA_3867: 12235 - KOG1812 Predicted E3 ubiquitin ligase, at 782,825 to 783,717 12235 mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783,972 to 787,068 12236

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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781,879 + -0.1
781,929 + +0.4
782,028 - -2.2
782,580 + +0.6
782,581 + -0.7
783,011 - 12235 mRNA_3867 0.21 +0.0
783,491 + 12235 mRNA_3867 0.75 +0.1
783,625 - 12235 mRNA_3867 0.90 +1.9
783,695 - -1.5
783,702 + +1.5
783,709 - +0.5
783,736 + -0.4
783,742 + +0.1
783,751 + +0.7
783,770 + -0.3
783,777 + +1.2
783,781 - +1.4
783,933 - +0.2
783,934 - +1.0
783,938 - -1.3
783,952 + +0.9
783,966 + +0.7
784,120 + -0.3
784,251 + +0.3
784,414 + 12236 mRNA_3868 0.14 -1.5
784,586 + 12236 mRNA_3868 0.20 +0.4

Or see this region's nucleotide sequence