Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3923

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12290 and 12291 are separated by 282 nucleotides12291 and 12292 are separated by 254 nucleotides mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720 12290 mRNA_3923: 12291 - K01465 URA4, pyrC dihydroorotase, at 913,003 to 914,315 12291 mRNA_3924: 12292 - KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily), at 914,570 to 918,595 12292

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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912,009 + +0.1
912,110 + +0.2
912,116 - +0.6
912,119 - +1.2
912,123 - +1.3
912,125 - +0.1
912,126 - +0.8
912,145 - +0.1
912,149 - -0.1
913,001 - -0.4
914,358 + +0.7
914,464 - -0.5

Or see this region's nucleotide sequence