Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3974

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12341 and 12342 are separated by 31 nucleotides12342 and 12343 are separated by 725 nucleotides mRNA_3973: 12341 - HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475, at 1,032,513 to 1,033,671 12341 mRNA_3974: 12342 - K02350 POLZ1, rev3 DNA polymerase zeta, at 1,033,703 to 1,040,837 12342 mRNA_3975: 12343 - KOG1938 Protein with predicted involvement in meiosis (GSG1), at 1,041,563 to 1,046,675 12343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,032,703 - 12341 mRNA_3973 0.16 -1.8
1,032,735 + 12341 mRNA_3973 0.19 -1.2
1,033,051 + 12341 mRNA_3973 0.46 +1.3
1,033,210 + 12341 mRNA_3973 0.60 +0.0
1,033,224 + 12341 mRNA_3973 0.61 +0.4
1,033,445 - 12341 mRNA_3973 0.80 +2.2
1,033,607 - +0.1
1,033,760 - -0.4
1,033,780 + +2.6
1,033,805 + +0.5
1,033,938 + -0.4
1,034,015 + +0.4
1,034,074 - -0.7
1,034,077 + +0.6
1,034,082 + -2.0
1,034,373 + -0.5
1,035,241 - 12342 mRNA_3974 0.22 -0.8
1,035,446 + 12342 mRNA_3974 0.24 +0.1
1,035,719 + 12342 mRNA_3974 0.28 +0.1
1,035,949 - 12342 mRNA_3974 0.31 +2.0
1,035,999 + 12342 mRNA_3974 0.32 +0.9
1,036,000 + 12342 mRNA_3974 0.32 -1.1
1,036,144 - 12342 mRNA_3974 0.34 +1.7
1,036,621 + 12342 mRNA_3974 0.41 +0.2
1,036,889 - 12342 mRNA_3974 0.45 -0.1
1,036,907 + 12342 mRNA_3974 0.45 +0.5
1,037,062 - 12342 mRNA_3974 0.47 -0.1
1,037,216 - 12342 mRNA_3974 0.49 +0.1
1,037,891 - 12342 mRNA_3974 0.59 -0.0
1,037,928 + 12342 mRNA_3974 0.59 -1.1
1,038,193 - 12342 mRNA_3974 0.63 -0.2
1,038,227 + 12342 mRNA_3974 0.63 -0.1
1,038,356 - 12342 mRNA_3974 0.65 -1.2
1,038,364 + 12342 mRNA_3974 0.65 -0.1
1,038,539 - 12342 mRNA_3974 0.68 +0.2
1,038,928 + 12342 mRNA_3974 0.73 +0.2
1,039,098 - 12342 mRNA_3974 0.76 +0.5
1,039,212 - 12342 mRNA_3974 0.77 -1.5
1,039,768 + 12342 mRNA_3974 0.85 +0.5
1,040,272 + +1.7
1,040,567 + -0.2
1,040,873 - +0.6
1,041,349 - +0.0
1,041,442 + -0.6
1,041,525 - -0.3

Or see this region's nucleotide sequence