Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4047

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12415 and 12416 are separated by 218 nucleotides mRNA_4047: 12415 - Hypothetical Protein, at 1,233,191 to 1,233,964 12415 mRNA_4048: 12416 - Hypothetical Protein, at 1,234,183 to 1,234,746 12416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,232,260 - +2.3
1,232,325 + -0.9
1,232,862 - -0.5
1,232,876 + +0.0
1,233,006 - -0.1
1,233,010 - +1.1
1,233,018 + +0.6
1,233,022 + +0.6
1,233,024 - +0.4
1,233,026 - +0.1
1,233,028 - +2.1
1,233,031 + -0.9
1,233,032 + +1.7
1,233,048 + +0.1
1,233,180 - -0.3
1,233,203 + +1.7
1,233,331 - 12415 mRNA_4047 0.18 -0.3
1,233,332 - 12415 mRNA_4047 0.18 +0.4
1,233,619 - 12415 mRNA_4047 0.55 +1.8
1,233,671 - 12415 mRNA_4047 0.62 +3.8
1,233,730 + 12415 mRNA_4047 0.70 -0.7
1,233,750 - 12415 mRNA_4047 0.72 +1.4
1,233,823 - 12415 mRNA_4047 0.82 +0.5
1,233,979 + +1.2
1,234,040 - -0.1
1,234,099 + +0.0
1,234,101 - +0.7
1,234,103 + -0.0
1,234,113 - +1.3
1,234,116 + -0.1
1,234,130 + +1.3
1,234,145 - +0.9
1,234,163 - -0.3
1,234,171 - -0.2
1,234,176 + -1.0
1,234,190 + +0.7
1,234,193 - -0.8
1,234,224 + +1.2
1,234,269 + 12416 mRNA_4048 0.15 +0.5
1,234,340 - 12416 mRNA_4048 0.28 +0.1
1,234,381 - 12416 mRNA_4048 0.35 +0.4
1,234,415 + 12416 mRNA_4048 0.41 +1.8
1,234,422 + 12416 mRNA_4048 0.42 +0.1
1,234,431 - 12416 mRNA_4048 0.44 -0.1
1,234,448 - 12416 mRNA_4048 0.47 +0.8
1,234,452 - 12416 mRNA_4048 0.48 -1.2
1,234,456 - 12416 mRNA_4048 0.48 +0.6
1,234,457 + 12416 mRNA_4048 0.49 +1.2
1,234,463 - 12416 mRNA_4048 0.50 +0.4
1,234,534 - 12416 mRNA_4048 0.62 +0.6
1,234,538 - 12416 mRNA_4048 0.63 +1.7
1,234,555 + 12416 mRNA_4048 0.66 +0.0
1,234,561 - 12416 mRNA_4048 0.67 +1.2
1,234,564 + 12416 mRNA_4048 0.68 -1.0
1,234,583 + 12416 mRNA_4048 0.71 -0.0
1,234,634 - 12416 mRNA_4048 0.80 +0.0
1,234,702 + -0.2
1,234,790 - +1.4
1,234,791 + +2.9
1,234,792 + +0.9
1,234,793 + +1.6
1,234,878 - +1.8
1,234,928 + -0.2

Or see this region's nucleotide sequence