Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4103

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12470 and 12471 are separated by 240 nucleotides12471 and 12472 are separated by 61 nucleotides mRNA_4102: 12470 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,362,795 to 1,364,929 12470 mRNA_4103: 12471 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 1,365,170 to 1,366,480 12471 mRNA_4104: 12472 - K06664 PEX2, PXMP3 peroxin-2, at 1,366,542 to 1,368,215 12472

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,364,943 - +0.8
1,364,952 - +0.6
1,365,038 + -0.1
1,365,092 - -0.4
1,365,113 + +0.2
1,365,118 - -0.4
1,365,142 - -0.1
1,365,262 + +0.4
1,366,299 - 12471 mRNA_4103 0.86 -2.2
1,366,437 + -1.9
1,366,618 - +0.6
1,367,051 - 12472 mRNA_4104 0.30 +0.9

Or see this region's nucleotide sequence