Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4106

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12473 and 12474 are separated by 552 nucleotides12474 and 12475 are separated by 211 nucleotides12475 and 12476 are separated by 141 nucleotides mRNA_4105: 12473 - K15306 RANBP1 Ran-binding protein 1, at 1,368,421 to 1,369,571 12473 mRNA_4106: 12474 - HMMPfam-L-lysine 6-monooxygenase (NADPH-requiring)-PF13434,SUPERFAMILY--SSF51905, at 1,370,124 to 1,372,356 12474 mRNA_4107: 12475 - K00621 GNPNAT1, GNA1 glucosamine-phosphate N-acetyltransferase, at 1,372,568 to 1,373,212 12475 mRNA_4108: 12476 - HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752, at 1,373,354 to 1,374,334 12476

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,369,578 + -0.7
1,369,736 - +0.1
1,369,737 - +0.7
1,369,755 + +2.4
1,369,884 - +1.0
1,369,908 + -0.1
1,369,976 + +0.4
1,369,978 + +0.4
1,370,004 + +1.5
1,370,021 - -0.2
1,370,047 + +1.9
1,370,057 - +2.8
1,370,069 - +0.1
1,370,105 + -0.1
1,370,115 + -0.7
1,370,128 - +1.6
1,370,185 + +0.2
1,370,239 + +1.2
1,370,306 + -1.2
1,370,331 + -2.2
1,370,626 + 12474 mRNA_4106 0.22 +0.3
1,370,653 - 12474 mRNA_4106 0.24 -0.0
1,370,772 - 12474 mRNA_4106 0.29 -0.4
1,370,892 + 12474 mRNA_4106 0.34 +0.4
1,371,304 - 12474 mRNA_4106 0.53 -0.2
1,371,596 - 12474 mRNA_4106 0.66 +0.1
1,371,770 - 12474 mRNA_4106 0.74 -1.0
1,372,093 + 12474 mRNA_4106 0.88 -1.1
1,372,315 - -1.0
1,372,349 - +0.5
1,372,499 - +0.3

Or see this region's nucleotide sequence