Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4124

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12491 and 12492 are separated by 885 nucleotides12492 and 12493 are separated by 471 nucleotides mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1,402,766 to 1,404,670 12491 mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,405,556 to 1,407,296 12492 mRNA_4125: 12493 - KOG0627 Heat shock transcription factor, at 1,407,768 to 1,409,382 12493

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,404,666 - +0.1
1,404,809 + -0.2
1,405,098 + +0.1
1,405,111 - +0.7
1,405,243 + -0.2
1,405,276 + +0.8
1,405,578 - -0.7
1,405,711 - -0.8
1,405,712 + +1.3
1,405,985 + 12492 mRNA_4124 0.25 -0.5
1,405,992 - 12492 mRNA_4124 0.25 +0.6
1,406,022 - 12492 mRNA_4124 0.27 +1.8
1,406,154 + 12492 mRNA_4124 0.34 +0.4
1,406,155 - 12492 mRNA_4124 0.34 -0.2
1,406,161 + 12492 mRNA_4124 0.35 +0.2
1,406,215 - 12492 mRNA_4124 0.38 -0.4
1,406,326 + 12492 mRNA_4124 0.44 -0.2
1,406,388 + 12492 mRNA_4124 0.48 +1.5
1,406,804 - 12492 mRNA_4124 0.72 -0.1
1,406,882 - 12492 mRNA_4124 0.76 +0.6
1,407,032 - 12492 mRNA_4124 0.85 +0.5
1,407,151 - +1.1
1,407,180 - -0.3
1,407,308 - -0.1
1,407,454 + +1.6
1,407,456 - +1.7
1,407,467 - -0.1
1,407,474 - +1.4
1,407,474 - +0.9
1,407,475 + +0.6
1,407,475 + +0.2
1,407,477 + +0.4
1,407,477 - -0.3
1,407,479 - -2.2
1,407,490 - +0.3
1,407,490 + -1.0
1,407,492 - -0.1
1,407,493 + -0.2
1,407,495 - +0.1
1,407,504 + +0.6
1,407,512 + +1.3
1,407,530 + +0.9
1,407,532 + +0.8
1,407,681 + +0.7
1,407,817 + -1.0
1,407,950 - 12493 mRNA_4125 0.11 +0.2
1,408,102 + 12493 mRNA_4125 0.21 +1.6
1,408,200 + 12493 mRNA_4125 0.27 +0.4
1,408,251 + 12493 mRNA_4125 0.30 -0.1
1,408,258 - 12493 mRNA_4125 0.30 -0.0

Or see this region's nucleotide sequence