Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4137

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12505 and 12506 are separated by 639 nucleotides mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,443,015 to 1,447,458 12505 mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1,448,098 to 1,448,646 12506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,442,134 + +2.1
1,442,142 + -0.3
1,442,258 - +1.3
1,442,261 - -0.2
1,442,262 + -0.0
1,442,267 - -0.4
1,442,292 - +1.2
1,442,309 - +1.5
1,442,310 + +1.4
1,442,338 + -0.4
1,442,458 - -0.1
1,442,462 + -0.4
1,442,475 - +0.2
1,442,483 - +0.0
1,442,612 + +0.3
1,442,624 + -0.5
1,442,758 - +1.8
1,442,768 + -0.4
1,442,776 + +0.7
1,442,783 - +1.8
1,442,784 - +0.2
1,442,784 + -0.2
1,442,792 - +0.4
1,442,797 + +0.5
1,442,929 + -0.5
1,442,941 + +0.4
1,442,981 + -2.4
1,443,091 - -1.1
1,443,222 - +0.5
1,443,379 - +2.0
1,443,524 - 12505 mRNA_4137 0.11 -1.4
1,443,663 - 12505 mRNA_4137 0.15 -1.3
1,443,787 + 12505 mRNA_4137 0.17 -1.0
1,443,952 - 12505 mRNA_4137 0.21 +0.6
1,444,239 + 12505 mRNA_4137 0.28 -0.0
1,444,410 - 12505 mRNA_4137 0.31 -0.5
1,444,546 - 12505 mRNA_4137 0.34 +0.4
1,444,730 - 12505 mRNA_4137 0.39 +1.2
1,444,823 - 12505 mRNA_4137 0.41 -2.1
1,444,840 + 12505 mRNA_4137 0.41 +2.3
1,444,857 + 12505 mRNA_4137 0.41 +1.8
1,445,225 + 12505 mRNA_4137 0.50 -1.1
1,445,433 + 12505 mRNA_4137 0.54 -2.3
1,446,050 + 12505 mRNA_4137 0.68 -2.6
1,446,126 - 12505 mRNA_4137 0.70 -3.7
1,446,186 + 12505 mRNA_4137 0.71 -3.9
1,446,266 + 12505 mRNA_4137 0.73 -4.3
1,446,470 - 12505 mRNA_4137 0.78 -0.3
1,446,620 - 12505 mRNA_4137 0.81 -2.3
1,446,663 + 12505 mRNA_4137 0.82 -4.1
1,447,015 + +0.3
1,447,065 + -0.1
1,447,069 + +1.2
1,447,212 - -1.0
1,447,217 + +1.0
1,447,478 - -1.2
1,447,570 - +0.2
1,447,770 - +2.2
1,447,788 + -0.1
1,447,947 + -0.2
1,447,950 + -0.3
1,448,046 + +0.1
1,448,060 + -0.7
1,448,060 - -0.2
1,448,215 - 12506 mRNA_4138 0.21 -0.6
1,448,363 + 12506 mRNA_4138 0.48 -0.4
1,448,439 - 12506 mRNA_4138 0.62 -1.1

Or see this region's nucleotide sequence