Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4148

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12515 and 12516 are separated by 194 nucleotides12516 and 12517 are separated by 412 nucleotides mRNA_4147: 12515 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,PRINTS-Adrenodoxin reductase family signature-PR00419,SUPERFAMILY--SSF51905, at 1,466,174 to 1,468,597 12515 mRNA_4148: 12516 - K00685 ATE1, ate1 arginine-tRNA-protein transferase, at 1,468,792 to 1,470,729 12516 mRNA_4149: 12517 - Hypothetical Protein, at 1,471,142 to 1,472,834 12517

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,467,920 - 12515 mRNA_4147 0.72 -3.2
1,468,304 - 12515 mRNA_4147 0.88 -0.1
1,468,658 + +0.4
1,468,699 + -0.2
1,469,073 + 12516 mRNA_4148 0.14 +1.3
1,469,093 + 12516 mRNA_4148 0.16 +0.6
1,469,381 - 12516 mRNA_4148 0.30 +0.2
1,470,061 - 12516 mRNA_4148 0.65 +1.9
1,470,088 + 12516 mRNA_4148 0.67 +1.0
1,470,097 - 12516 mRNA_4148 0.67 +0.8
1,470,257 - 12516 mRNA_4148 0.76 -0.1
1,470,363 - 12516 mRNA_4148 0.81 +0.8
1,470,398 - 12516 mRNA_4148 0.83 +1.2
1,470,423 - 12516 mRNA_4148 0.84 +0.7
1,470,524 - 12516 mRNA_4148 0.89 +0.8
1,470,681 + -0.4
1,470,778 - +0.0
1,470,784 + -0.9
1,470,939 - -0.7
1,470,985 - +0.2
1,471,111 - -1.3
1,471,729 - 12517 mRNA_4149 0.35 +0.7

Or see this region's nucleotide sequence