Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4149

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12516 and 12517 are separated by 412 nucleotides mRNA_4148: 12516 - K00685 ATE1, ate1 arginine-tRNA-protein transferase, at 1,468,792 to 1,470,729 12516 mRNA_4149: 12517 - Hypothetical Protein, at 1,471,142 to 1,472,834 12517

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,470,257 - 12516 mRNA_4148 0.76 -0.1
1,470,363 - 12516 mRNA_4148 0.81 +0.8
1,470,398 - 12516 mRNA_4148 0.83 +1.2
1,470,423 - 12516 mRNA_4148 0.84 +0.7
1,470,524 - 12516 mRNA_4148 0.89 +0.8
1,470,681 + -0.4
1,470,778 - +0.0
1,470,784 + -0.9
1,470,939 - -0.7
1,470,985 - +0.2
1,471,111 - -1.3
1,471,729 - 12517 mRNA_4149 0.35 +0.7
1,471,871 + 12517 mRNA_4149 0.43 +0.6
1,472,116 + 12517 mRNA_4149 0.58 +1.5
1,472,265 - 12517 mRNA_4149 0.66 +3.7
1,472,276 + 12517 mRNA_4149 0.67 -0.1
1,472,276 - 12517 mRNA_4149 0.67 +1.4
1,472,315 + 12517 mRNA_4149 0.69 +2.3
1,472,714 + +2.0
1,472,993 - +0.0
1,473,148 + +0.3
1,473,441 - +1.9

Or see this region's nucleotide sequence