Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4203

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12571 and 12572 are separated by 256 nucleotides mRNA_4203: 12571 - K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2, at 1,601,510 to 1,605,241 12571 mRNA_4204: 12572 - K15292 STXBP1, MUNC18-1 syntaxin-binding protein 1, at 1,605,498 to 1,608,617 12572

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,600,915 + -2.5
1,601,122 - +0.4
1,603,480 + 12571 mRNA_4203 0.53 -0.2
1,603,986 + 12571 mRNA_4203 0.66 -1.6
1,604,018 + 12571 mRNA_4203 0.67 +0.2
1,604,078 - 12571 mRNA_4203 0.69 +1.3
1,604,456 + 12571 mRNA_4203 0.79 +0.4
1,604,562 + 12571 mRNA_4203 0.82 -0.8
1,605,281 - +0.2
1,605,284 + +0.8
1,605,298 - +1.8
1,605,302 + +0.3
1,605,314 + -0.6
1,605,410 - +0.6
1,605,416 + -2.6
1,605,434 - -0.2
1,605,445 + -0.4
1,605,456 + +1.4
1,605,458 + +0.5

Or see this region's nucleotide sequence