Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4249

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12616 and 12617 are separated by 617 nucleotides12617 and 12618 are separated by 212 nucleotides mRNA_4248: 12616 - K17764 MMM1 maintenance of mitochondrial morphology protein 1, at 1,706,710 to 1,708,657 12616 mRNA_4249: 12617 - K10436 MAPRE microtubule-associated protein, RP/EB family, at 1,709,275 to 1,710,811 12617 mRNA_4250: 12618 - K08956 AFG3 AFG3 family protein, at 1,711,024 to 1,714,296 12618

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
1,708,646 - +0.7
1,708,647 + +1.0
1,708,816 - -1.1
1,708,837 + -0.7
1,709,005 - -0.6
1,709,383 + -0.1
1,709,820 + 12617 mRNA_4249 0.35 +1.8
1,709,950 + 12617 mRNA_4249 0.44 +0.6
1,709,982 + 12617 mRNA_4249 0.46 +1.0
1,710,279 + 12617 mRNA_4249 0.65 -0.1
1,710,537 + 12617 mRNA_4249 0.82 +0.8
1,710,675 + +2.3
1,710,682 - +0.1
1,710,683 + +0.4
1,710,698 + +0.2
1,710,709 + -0.2
1,710,711 + +0.5
1,710,814 - +0.1
1,710,825 + +1.6
1,710,830 + +0.7
1,710,924 + -0.7
1,710,953 - +2.1
1,710,960 + +0.9

Or see this region's nucleotide sequence