Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4264

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12631 and 12632 are separated by 413 nucleotides12632 and 12633 are separated by 526 nucleotides mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1,741,232 to 1,743,677 12631 mRNA_4264: 12632 - Hypothetical Protein, at 1,744,091 to 1,745,665 12632 mRNA_4265: 12633 - BLAST lytic polysaccharide monooxygenase [Cenococcum geophi..., at 1,746,192 to 1,748,005 12633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,744,224 + +1.1
1,744,232 + +0.3
1,744,280 + 12632 mRNA_4264 0.12 +2.5
1,744,610 + 12632 mRNA_4264 0.33 +0.1
1,744,794 - 12632 mRNA_4264 0.45 +0.5
1,744,957 + 12632 mRNA_4264 0.55 +1.6
1,745,811 + +0.0
1,746,478 + 12633 mRNA_4265 0.16 +1.9

Or see this region's nucleotide sequence