Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4312

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12679 and 12680 are separated by 390 nucleotides mRNA_4311: 12679 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,871,277 to 1,872,200 12679 mRNA_4312: 12680 - K14802 DRS2, ATP8A phospholipid-transporting ATPase, at 1,872,591 to 1,877,235 12680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,871,611 + 12679 mRNA_4311 0.36 -0.0
1,871,676 + 12679 mRNA_4311 0.43 -0.4
1,871,813 - 12679 mRNA_4311 0.58 -0.6
1,871,853 - 12679 mRNA_4311 0.62 +0.1
1,871,867 - 12679 mRNA_4311 0.64 -0.2
1,871,966 - 12679 mRNA_4311 0.75 +0.5
1,872,127 + -0.3
1,872,223 - -0.1
1,872,223 - +1.0
1,872,277 - +0.6
1,872,314 + -0.6
1,872,421 + -1.0
1,872,573 - +0.8
1,872,647 - +0.6
1,872,885 + +1.8
1,872,920 + +0.4
1,873,047 + -0.0
1,873,143 - 12680 mRNA_4312 0.12 -1.1
1,873,444 - 12680 mRNA_4312 0.18 -0.4
1,873,640 - 12680 mRNA_4312 0.23 -0.2
1,873,801 + 12680 mRNA_4312 0.26 -0.1
1,873,864 + 12680 mRNA_4312 0.27 +0.9
1,873,941 + 12680 mRNA_4312 0.29 -0.9
1,874,358 + 12680 mRNA_4312 0.38 +1.0
1,874,681 + 12680 mRNA_4312 0.45 +1.4
1,874,803 + 12680 mRNA_4312 0.48 +1.0
1,874,945 - 12680 mRNA_4312 0.51 +1.1
1,875,007 - 12680 mRNA_4312 0.52 +0.4
1,875,367 + 12680 mRNA_4312 0.60 +1.2
1,875,383 + 12680 mRNA_4312 0.60 +1.2
1,875,658 - 12680 mRNA_4312 0.66 +0.4
1,875,810 - 12680 mRNA_4312 0.69 -0.2
1,875,815 + 12680 mRNA_4312 0.69 -0.2
1,875,840 + 12680 mRNA_4312 0.70 +0.4
1,875,843 - 12680 mRNA_4312 0.70 +0.1
1,875,860 + 12680 mRNA_4312 0.70 +2.0
1,876,226 + 12680 mRNA_4312 0.78 +2.3
1,876,381 + 12680 mRNA_4312 0.82 -0.2
1,876,726 + 12680 mRNA_4312 0.89 +0.2
1,877,063 + -0.2
1,877,189 + +0.2
1,877,670 + +0.5
1,877,674 + +0.6
1,877,676 - +0.1
1,877,810 - -0.4
1,877,816 + +3.3
1,877,819 - +0.3
1,877,971 + -0.0
1,877,980 - -0.2
1,877,984 + +0.3
1,877,987 - +1.1
1,878,097 + -0.3
1,878,114 - -1.2
1,878,114 - +0.4
1,878,114 - -0.9
1,878,118 - +0.4
1,878,141 - -0.4
1,878,145 + -0.5

Or see this region's nucleotide sequence