Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4359

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12727 and 12728 are separated by 227 nucleotides mRNA_4359: 12727 - Hypothetical Protein, at 194 to 736 12727 mRNA_4360: 12728 - Hypothetical Protein, at 964 to 3,087 12728

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1 + +1.8
34 + +0.5
36 + +1.3
40 + -1.1
106 - -0.8
115 + +0.6
156 - +0.8
162 + +0.2
170 + +0.1
318 + 12727 mRNA_4359 0.23 -0.3
397 + 12727 mRNA_4359 0.37 +2.4
440 + 12727 mRNA_4359 0.45 -0.1
450 + 12727 mRNA_4359 0.47 +1.8
491 + 12727 mRNA_4359 0.55 -1.2
494 - 12727 mRNA_4359 0.55 -1.1
500 - 12727 mRNA_4359 0.56 +0.8
513 + 12727 mRNA_4359 0.59 -0.3
527 - 12727 mRNA_4359 0.61 -0.3
535 + 12727 mRNA_4359 0.63 +1.9
537 - 12727 mRNA_4359 0.63 +0.4
573 - 12727 mRNA_4359 0.70 +0.6
575 - 12727 mRNA_4359 0.70 -0.3
575 - 12727 mRNA_4359 0.70 +0.0
585 + 12727 mRNA_4359 0.72 +1.5
627 - 12727 mRNA_4359 0.80 +0.2
629 + 12727 mRNA_4359 0.80 +0.2
632 + 12727 mRNA_4359 0.81 +1.6
655 + 12727 mRNA_4359 0.85 -0.9
657 - 12727 mRNA_4359 0.85 +0.5
666 + 12727 mRNA_4359 0.87 -0.2
837 + -2.4
866 + -0.4
966 + -0.1
1,080 + -0.1
1,091 + -0.1
1,091 + +0.1
1,092 + -0.8
1,119 + +0.9
1,180 - 12728 mRNA_4360 0.10 +0.2
1,185 - 12728 mRNA_4360 0.10 -0.7
1,186 + 12728 mRNA_4360 0.10 +0.1
1,262 + 12728 mRNA_4360 0.14 -0.1
1,362 + 12728 mRNA_4360 0.19 -0.5
1,365 - 12728 mRNA_4360 0.19 +0.1
1,368 - 12728 mRNA_4360 0.19 -0.2
1,381 + 12728 mRNA_4360 0.20 +0.9
1,539 - 12728 mRNA_4360 0.27 +1.3
1,589 + 12728 mRNA_4360 0.29 +1.0
1,630 + 12728 mRNA_4360 0.31 -0.5
1,688 + 12728 mRNA_4360 0.34 +0.5
1,692 + 12728 mRNA_4360 0.34 -0.2
1,698 - 12728 mRNA_4360 0.35 -0.7
1,699 + 12728 mRNA_4360 0.35 +0.0

Or see this region's nucleotide sequence