Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4369

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12737 and 12738 are separated by 405 nucleotides mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29,253 to 29,815 12737 mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30,221 to 32,027 12738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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28,357 - +1.1
28,362 + +0.9
28,481 + +0.1
28,533 + +2.1
28,680 + +0.0
28,784 - +0.3
28,862 - -0.4
28,867 + +0.7
28,867 + +0.4
28,870 - -0.7
28,878 - +1.2
29,035 - +1.0
29,094 + -0.1
29,103 + +0.3
29,218 - +2.2
29,668 - 12737 mRNA_4369 0.74 +0.3
29,839 + +0.3
30,499 - 12738 mRNA_4370 0.15 +1.5
30,508 - 12738 mRNA_4370 0.16 +1.9

Or see this region's nucleotide sequence