Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4384

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12751 and 12752 are separated by 321 nucleotides12752 and 12753 are separated by 96 nucleotides mRNA_4383: 12751 - Hypothetical Protein, at 63,561 to 65,177 12751 mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65,499 to 68,176 12752 mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68,273 to 69,417 12753

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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64,638 - 12751 mRNA_4383 0.67 -0.5
64,656 - 12751 mRNA_4383 0.68 +0.1
64,809 - 12751 mRNA_4383 0.77 +0.6
64,829 + 12751 mRNA_4383 0.78 -0.3
64,830 - 12751 mRNA_4383 0.78 +0.3
64,974 - 12751 mRNA_4383 0.87 +0.4
65,093 + -0.3
65,101 - +0.9
65,128 - +2.2
65,136 + +1.3
65,266 + -0.2
65,323 - +2.2
65,390 - +1.2
65,392 + +0.1
65,434 + +1.7
65,439 + +2.7
65,441 + -0.4
65,443 - +0.1
65,728 - +0.3
65,875 - 12752 mRNA_4384 0.14 -0.8
65,951 + 12752 mRNA_4384 0.17 +0.0
65,960 + 12752 mRNA_4384 0.17 +0.8
66,171 - 12752 mRNA_4384 0.25 +0.3
66,250 + 12752 mRNA_4384 0.28 +0.4
66,293 + 12752 mRNA_4384 0.30 +0.5
66,346 + 12752 mRNA_4384 0.32 -0.1
66,733 - 12752 mRNA_4384 0.46 -0.1
66,739 - 12752 mRNA_4384 0.46 +1.0
66,892 + 12752 mRNA_4384 0.52 +0.1
67,043 + 12752 mRNA_4384 0.58 +0.3
67,280 - 12752 mRNA_4384 0.67 -1.1
67,638 - 12752 mRNA_4384 0.80 +2.6
67,885 - 12752 mRNA_4384 0.89 -0.6
67,887 - 12752 mRNA_4384 0.89 +1.1
67,920 - -0.2
68,005 + -0.1
68,016 + +0.1
68,017 + +1.1
68,086 - -0.3
68,087 - +0.8
68,090 - +1.2
68,099 + +0.8
68,109 - +0.7
68,216 + +1.1
68,241 - +0.4
68,338 + +0.4
68,503 + 12753 mRNA_4385 0.20 -0.5
68,536 + 12753 mRNA_4385 0.23 +2.1
68,648 - 12753 mRNA_4385 0.33 +1.6
68,731 - 12753 mRNA_4385 0.40 +2.0
68,772 + 12753 mRNA_4385 0.44 +0.6
69,019 - 12753 mRNA_4385 0.65 -0.4
69,022 - 12753 mRNA_4385 0.65 +1.6
69,030 + 12753 mRNA_4385 0.66 +0.8

Or see this region's nucleotide sequence