Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4395

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12762 and 12763 are separated by 505 nucleotides12763 and 12764 are separated by 221 nucleotides12764 and 12765 are separated by 150 nucleotides mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560 12762 mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251 12763 mRNA_4396: 12764 - BLAST NAD(P)-dependent alcohol dehydrogenase [Mycena chloro..., at 89,473 to 89,864 12764 mRNA_4397: 12765 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129, at 90,015 to 90,968 12765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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87,307 - 12762 mRNA_4394 0.90 -0.1
87,330 - -0.3
87,330 - +0.6
87,331 - +0.4
87,449 + -0.5
87,461 + +0.3
87,470 + +0.2
87,503 + -0.9
87,628 - +1.1
87,652 - +1.0
87,674 + +1.9
87,931 + -0.4
87,999 + +1.5
88,149 - -0.2
88,843 - 12763 mRNA_4395 0.66 -0.4
88,845 + 12763 mRNA_4395 0.66 +0.6
88,981 - 12763 mRNA_4395 0.77 +0.6
89,115 - 12763 mRNA_4395 0.88 -0.6
89,441 - +0.6
89,921 + -2.1
90,004 - -0.4

Or see this region's nucleotide sequence