Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4398

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12765 and 12766 are separated by 387 nucleotides12766 and 12767 are separated by 811 nucleotides mRNA_4397: 12765 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129, at 90,015 to 90,968 12765 mRNA_4398: 12766 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 91,356 to 92,891 12766 mRNA_4399: 12767 - HMMPfam-CFEM domain-PF05730, at 93,703 to 94,660 12767

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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91,566 + 12766 mRNA_4398 0.14 +0.5
91,621 - 12766 mRNA_4398 0.17 +2.7
91,865 - 12766 mRNA_4398 0.33 -0.5
91,922 + 12766 mRNA_4398 0.37 -0.3
91,960 + 12766 mRNA_4398 0.39 +0.0
92,027 + 12766 mRNA_4398 0.44 +0.6
92,491 + 12766 mRNA_4398 0.74 -1.5
92,514 + 12766 mRNA_4398 0.75 -0.4
92,706 + 12766 mRNA_4398 0.88 +0.9
92,783 + +0.3
92,785 - +0.3
92,809 + -2.4
92,916 + -2.5
92,925 + +2.1
92,927 - +0.6
92,932 - -0.8
92,950 - -0.1
92,962 - +2.5
92,964 + -0.1
92,967 - -0.7
92,972 - -0.1
92,989 - +0.8
93,028 + +0.3
93,095 + +0.5
93,121 - +1.7
93,151 - +0.1
93,265 - +0.3
93,268 - -0.1
93,269 - -0.7
93,283 - +1.1
93,284 + -0.1
93,416 - -1.5
93,565 + +0.1

Or see this region's nucleotide sequence