Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4402

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12769 and 12770 are separated by 119 nucleotides12770 and 12771 are separated by 249 nucleotides mRNA_4401: 12769 - KOG3303 Predicted alpha-helical protein, potentially involved in replication/repair, at 97,723 to 98,507 12769 mRNA_4402: 12770 - Hypothetical Protein, at 98,627 to 98,893 12770 mRNA_4403: 12771 - Hypothetical Protein, at 99,143 to 102,687 12771

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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98,550 - +0.7
98,662 + 12770 mRNA_4402 0.13 -0.7
98,697 + 12770 mRNA_4402 0.26 +1.5
98,697 + 12770 mRNA_4402 0.26 -0.6
98,709 + 12770 mRNA_4402 0.31 -0.1
98,836 - 12770 mRNA_4402 0.78 -0.1
98,981 - -0.6
99,140 - -3.1
99,145 - +0.5
99,146 - -1.1
99,157 + -0.6
99,169 + +0.9
99,185 + +1.3
99,200 + +1.6
99,266 + +0.8
99,268 + +0.0
99,276 + +0.2
99,310 + +0.6
99,335 + +0.6
99,444 - -0.3
99,465 - +1.2
99,475 - -0.1
99,480 + +1.1
99,632 - 12771 mRNA_4403 0.14 +0.2

Or see this region's nucleotide sequence