Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4431

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12798 and 12799 are separated by 247 nucleotides mRNA_4430: 12798 - KOG0322 G-protein beta subunit-like protein GNB1L, contains WD repeats, at 167,017 to 168,895 12798 mRNA_4431: 12799 - Hypothetical Protein, at 169,143 to 170,784 12799

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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168,949 - -0.5
168,982 + +2.1
169,034 + +0.2
169,108 - +0.8
169,125 + +0.1
169,128 - -0.0
169,166 - -0.9
169,170 - -2.3
169,381 + 12799 mRNA_4431 0.14 +1.0
169,413 - 12799 mRNA_4431 0.16 -0.2
169,542 - 12799 mRNA_4431 0.24 -0.8
169,546 + 12799 mRNA_4431 0.25 +0.8
169,548 - 12799 mRNA_4431 0.25 -0.9
169,563 - 12799 mRNA_4431 0.26 -0.2
169,840 + 12799 mRNA_4431 0.42 +0.2
170,026 + 12799 mRNA_4431 0.54 -1.3
170,304 + 12799 mRNA_4431 0.71 +1.0
170,340 - 12799 mRNA_4431 0.73 +1.8
170,438 - 12799 mRNA_4431 0.79 +0.1
170,438 - 12799 mRNA_4431 0.79 +1.0
170,438 - 12799 mRNA_4431 0.79 +1.2
170,718 - +0.7
170,774 - +1.3
171,015 - +1.1
171,051 - +0.5
171,056 + +0.2
171,067 + +0.7
171,219 + -0.6
171,617 + +2.9

Or see this region's nucleotide sequence