Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4488

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12855 and 12856 are separated by 336 nucleotides12856 and 12857 are separated by 215 nucleotides mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298,975 to 301,181 12855 mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496 12856 mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302,712 to 304,024 12857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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302,582 - +1.9
302,596 - -0.0
302,620 + +0.5
302,643 + +1.0
302,762 + +0.6
302,764 - -1.9
302,884 + 12857 mRNA_4489 0.13 +0.8
303,064 - 12857 mRNA_4489 0.27 +0.6
303,201 - 12857 mRNA_4489 0.37 +0.3
303,480 - 12857 mRNA_4489 0.58 +0.1
303,490 - 12857 mRNA_4489 0.59 -0.2

Or see this region's nucleotide sequence