Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4514

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12881 and 12882 are separated by 207 nucleotides12882 and 12883 are separated by 432 nucleotides mRNA_4513: 12881 - K00981 E2.7.7.41, CDS1, CDS2, cdsA phosphatidate cytidylyltransferase, at 355,314 to 357,879 12881 mRNA_4514: 12882 - K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma, at 358,087 to 360,216 12882 mRNA_4515: 12883 - SUPERFAMILY--SSF51735, at 360,649 to 361,233 12883

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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358,097 - -0.5
358,114 - +0.9
358,376 - 12882 mRNA_4514 0.14 -2.0
360,273 + +0.0
360,433 + +0.2
360,545 - +1.4
360,577 - -0.7
360,604 + -0.2
360,704 + +0.7
360,749 + 12883 mRNA_4515 0.17 +1.5
361,128 + 12883 mRNA_4515 0.82 -1.0
361,132 - 12883 mRNA_4515 0.83 -1.1

Or see this region's nucleotide sequence