Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4627

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12994 and 12995 are separated by 281 nucleotides12995 and 12996 are separated by 490 nucleotides mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630,956 to 632,424 12994 mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632,706 to 638,769 12995 mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639,260 to 641,629 12996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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631,992 + 12994 mRNA_4626 0.71 -0.0
632,513 + -0.4
632,684 - +3.0
632,836 - +0.5
632,996 + +1.7
633,680 + 12995 mRNA_4627 0.16 +1.2
633,681 + 12995 mRNA_4627 0.16 +1.5
633,685 - 12995 mRNA_4627 0.16 +0.5
634,011 + 12995 mRNA_4627 0.22 -0.0
634,131 + 12995 mRNA_4627 0.23 +3.0
634,247 - 12995 mRNA_4627 0.25 +1.2
634,574 - 12995 mRNA_4627 0.31 +3.0
634,710 - 12995 mRNA_4627 0.33 +3.6
635,189 + 12995 mRNA_4627 0.41 +1.4
635,448 + 12995 mRNA_4627 0.45 +1.2
635,593 - 12995 mRNA_4627 0.48 +1.0
636,689 + 12995 mRNA_4627 0.66 +1.1
636,715 - 12995 mRNA_4627 0.66 +1.6
636,934 - 12995 mRNA_4627 0.70 +0.7
637,225 + 12995 mRNA_4627 0.75 +0.5
637,243 - 12995 mRNA_4627 0.75 +2.8
637,266 - 12995 mRNA_4627 0.75 +0.1
637,681 + 12995 mRNA_4627 0.82 +0.0
637,888 + 12995 mRNA_4627 0.85 +0.7
637,955 - 12995 mRNA_4627 0.87 +1.7
638,002 + 12995 mRNA_4627 0.87 -0.4
638,056 - 12995 mRNA_4627 0.88 +1.1
638,124 + 12995 mRNA_4627 0.89 +0.6
638,545 - +0.7
638,789 + -0.2
638,800 - -0.1
638,817 - +0.4
638,826 - +0.8
638,952 - +0.1
638,958 + -2.1
639,112 + +0.5
639,403 - -0.6
639,424 - +0.1
639,426 + -1.1
639,427 + +2.4
639,540 - 12996 mRNA_4628 0.12 +0.5

Or see this region's nucleotide sequence