Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4640

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13007 and 13008 are separated by 266 nucleotides13008 and 13009 are separated by 393 nucleotides mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665,005 to 666,466 13007 mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666,733 to 668,799 13008 mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669,193 to 672,697 13009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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665,845 - 13007 mRNA_4639 0.57 -0.3
665,974 - 13007 mRNA_4639 0.66 +0.1
665,997 - 13007 mRNA_4639 0.68 -0.3
666,126 + 13007 mRNA_4639 0.77 +0.4
666,260 + 13007 mRNA_4639 0.86 -0.1
666,556 + +1.3
667,259 - 13008 mRNA_4640 0.25 +0.5
667,377 - 13008 mRNA_4640 0.31 +0.8
667,415 + 13008 mRNA_4640 0.33 -1.4
667,416 + 13008 mRNA_4640 0.33 -0.1
667,433 - 13008 mRNA_4640 0.34 -0.1
667,574 - 13008 mRNA_4640 0.41 +2.1
667,657 - 13008 mRNA_4640 0.45 -0.1
667,687 - 13008 mRNA_4640 0.46 +0.4
667,687 - 13008 mRNA_4640 0.46 +1.4
668,025 + 13008 mRNA_4640 0.63 -0.5
668,137 - 13008 mRNA_4640 0.68 -0.4
668,138 + 13008 mRNA_4640 0.68 +1.6
668,314 + 13008 mRNA_4640 0.76 -1.3
668,398 - 13008 mRNA_4640 0.81 +0.6
668,592 + 13008 mRNA_4640 0.90 +1.4
668,746 - -0.5
668,747 - +0.2
668,878 + +1.1
668,898 - -0.7
669,789 + 13009 mRNA_4641 0.17 -0.8

Or see this region's nucleotide sequence