Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4682

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13049 and 13050 are separated by 760 nucleotides13050 and 13051 are separated by 381 nucleotides mRNA_4681: 13049 - K01539 ATP1A sodium/potassium-transporting ATPase subunit alpha, at 759,600 to 763,345 13049 mRNA_4682: 13050 - HMMPfam-Tim44-like domain-PF04280,SMART--SM00978,SUPERFAMILY--SSF54427, at 764,106 to 764,879 13050 mRNA_4683: 13051 - Hypothetical Protein, at 765,261 to 766,282 13051

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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763,284 + +1.1
763,324 + -0.6
763,432 + -1.0
763,469 - +1.3
763,587 + -1.6
763,608 - +0.7
763,890 - +0.6
763,904 + +2.7
765,054 + +1.5
765,350 - +1.1
765,373 + 13051 mRNA_4683 0.11 -0.5

Or see this region's nucleotide sequence